From 7d5c3dcd969161322deed6c43f8a6a3cb92c3369 Mon Sep 17 00:00:00 2001
From: Micah Anderson <micah@riseup.net>
Date: Tue, 11 Nov 2014 11:53:55 -0500
Subject: upgrade to 14.4.1

---
 docs/sphinxext/docscrape.py | 497 ++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 497 insertions(+)
 create mode 100644 docs/sphinxext/docscrape.py

(limited to 'docs/sphinxext/docscrape.py')

diff --git a/docs/sphinxext/docscrape.py b/docs/sphinxext/docscrape.py
new file mode 100644
index 0000000..f374b3d
--- /dev/null
+++ b/docs/sphinxext/docscrape.py
@@ -0,0 +1,497 @@
+"""Extract reference documentation from the NumPy source tree.
+
+"""
+
+import inspect
+import textwrap
+import re
+import pydoc
+from StringIO import StringIO
+from warnings import warn
+4
+class Reader(object):
+    """A line-based string reader.
+
+    """
+    def __init__(self, data):
+        """
+        Parameters
+        ----------
+        data : str
+           String with lines separated by '\n'.
+
+        """
+        if isinstance(data,list):
+            self._str = data
+        else:
+            self._str = data.split('\n') # store string as list of lines
+
+        self.reset()
+
+    def __getitem__(self, n):
+        return self._str[n]
+
+    def reset(self):
+        self._l = 0 # current line nr
+
+    def read(self):
+        if not self.eof():
+            out = self[self._l]
+            self._l += 1
+            return out
+        else:
+            return ''
+
+    def seek_next_non_empty_line(self):
+        for l in self[self._l:]:
+            if l.strip():
+                break
+            else:
+                self._l += 1
+
+    def eof(self):
+        return self._l >= len(self._str)
+
+    def read_to_condition(self, condition_func):
+        start = self._l
+        for line in self[start:]:
+            if condition_func(line):
+                return self[start:self._l]
+            self._l += 1
+            if self.eof():
+                return self[start:self._l+1]
+        return []
+
+    def read_to_next_empty_line(self):
+        self.seek_next_non_empty_line()
+        def is_empty(line):
+            return not line.strip()
+        return self.read_to_condition(is_empty)
+
+    def read_to_next_unindented_line(self):
+        def is_unindented(line):
+            return (line.strip() and (len(line.lstrip()) == len(line)))
+        return self.read_to_condition(is_unindented)
+
+    def peek(self,n=0):
+        if self._l + n < len(self._str):
+            return self[self._l + n]
+        else:
+            return ''
+
+    def is_empty(self):
+        return not ''.join(self._str).strip()
+
+
+class NumpyDocString(object):
+    def __init__(self,docstring):
+        docstring = textwrap.dedent(docstring).split('\n')
+
+        self._doc = Reader(docstring)
+        self._parsed_data = {
+            'Signature': '',
+            'Summary': [''],
+            'Extended Summary': [],
+            'Parameters': [],
+            'Returns': [],
+            'Raises': [],
+            'Warns': [],
+            'Other Parameters': [],
+            'Attributes': [],
+            'Methods': [],
+            'See Also': [],
+            'Notes': [],
+            'Warnings': [],
+            'References': '',
+            'Examples': '',
+            'index': {}
+            }
+
+        self._parse()
+
+    def __getitem__(self,key):
+        return self._parsed_data[key]
+
+    def __setitem__(self,key,val):
+        if not self._parsed_data.has_key(key):
+            warn("Unknown section %s" % key)
+        else:
+            self._parsed_data[key] = val
+
+    def _is_at_section(self):
+        self._doc.seek_next_non_empty_line()
+
+        if self._doc.eof():
+            return False
+
+        l1 = self._doc.peek().strip()  # e.g. Parameters
+
+        if l1.startswith('.. index::'):
+            return True
+
+        l2 = self._doc.peek(1).strip() #    ---------- or ==========
+        return l2.startswith('-'*len(l1)) or l2.startswith('='*len(l1))
+
+    def _strip(self,doc):
+        i = 0
+        j = 0
+        for i,line in enumerate(doc):
+            if line.strip(): break
+
+        for j,line in enumerate(doc[::-1]):
+            if line.strip(): break
+
+        return doc[i:len(doc)-j]
+
+    def _read_to_next_section(self):
+        section = self._doc.read_to_next_empty_line()
+
+        while not self._is_at_section() and not self._doc.eof():
+            if not self._doc.peek(-1).strip(): # previous line was empty
+                section += ['']
+
+            section += self._doc.read_to_next_empty_line()
+
+        return section
+
+    def _read_sections(self):
+        while not self._doc.eof():
+            data = self._read_to_next_section()
+            name = data[0].strip()
+
+            if name.startswith('..'): # index section
+                yield name, data[1:]
+            elif len(data) < 2:
+                yield StopIteration
+            else:
+                yield name, self._strip(data[2:])
+
+    def _parse_param_list(self,content):
+        r = Reader(content)
+        params = []
+        while not r.eof():
+            header = r.read().strip()
+            if ' : ' in header:
+                arg_name, arg_type = header.split(' : ')[:2]
+            else:
+                arg_name, arg_type = header, ''
+
+            desc = r.read_to_next_unindented_line()
+            desc = dedent_lines(desc)
+
+            params.append((arg_name,arg_type,desc))
+
+        return params
+
+    
+    _name_rgx = re.compile(r"^\s*(:(?P<role>\w+):`(?P<name>[a-zA-Z0-9_.-]+)`|"
+                           r" (?P<name2>[a-zA-Z0-9_.-]+))\s*", re.X)
+    def _parse_see_also(self, content):
+        """
+        func_name : Descriptive text
+            continued text
+        another_func_name : Descriptive text
+        func_name1, func_name2, :meth:`func_name`, func_name3
+
+        """
+        items = []
+
+        def parse_item_name(text):
+            """Match ':role:`name`' or 'name'"""
+            m = self._name_rgx.match(text)
+            if m:
+                g = m.groups()
+                if g[1] is None:
+                    return g[3], None
+                else:
+                    return g[2], g[1]
+            raise ValueError("%s is not a item name" % text)
+
+        def push_item(name, rest):
+            if not name:
+                return
+            name, role = parse_item_name(name)
+            items.append((name, list(rest), role))
+            del rest[:]
+
+        current_func = None
+        rest = []
+        
+        for line in content:
+            if not line.strip(): continue
+
+            m = self._name_rgx.match(line)
+            if m and line[m.end():].strip().startswith(':'):
+                push_item(current_func, rest)
+                current_func, line = line[:m.end()], line[m.end():]
+                rest = [line.split(':', 1)[1].strip()]
+                if not rest[0]:
+                    rest = []
+            elif not line.startswith(' '):
+                push_item(current_func, rest)
+                current_func = None
+                if ',' in line:
+                    for func in line.split(','):
+                        push_item(func, [])
+                elif line.strip():
+                    current_func = line
+            elif current_func is not None:
+                rest.append(line.strip())
+        push_item(current_func, rest)
+        return items
+
+    def _parse_index(self, section, content):
+        """
+        .. index: default
+           :refguide: something, else, and more
+
+        """
+        def strip_each_in(lst):
+            return [s.strip() for s in lst]
+
+        out = {}
+        section = section.split('::')
+        if len(section) > 1:
+            out['default'] = strip_each_in(section[1].split(','))[0]
+        for line in content:
+            line = line.split(':')
+            if len(line) > 2:
+                out[line[1]] = strip_each_in(line[2].split(','))
+        return out
+    
+    def _parse_summary(self):
+        """Grab signature (if given) and summary"""
+        if self._is_at_section():
+            return
+
+        summary = self._doc.read_to_next_empty_line()
+        summary_str = " ".join([s.strip() for s in summary]).strip()
+        if re.compile('^([\w., ]+=)?\s*[\w\.]+\(.*\)$').match(summary_str):
+            self['Signature'] = summary_str
+            if not self._is_at_section():
+                self['Summary'] = self._doc.read_to_next_empty_line()
+        else:
+            self['Summary'] = summary
+
+        if not self._is_at_section():
+            self['Extended Summary'] = self._read_to_next_section()
+    
+    def _parse(self):
+        self._doc.reset()
+        self._parse_summary()
+
+        for (section,content) in self._read_sections():
+            if not section.startswith('..'):
+                section = ' '.join([s.capitalize() for s in section.split(' ')])
+            if section in ('Parameters', 'Attributes', 'Methods',
+                           'Returns', 'Raises', 'Warns'):
+                self[section] = self._parse_param_list(content)
+            elif section.startswith('.. index::'):
+                self['index'] = self._parse_index(section, content)
+            elif section == 'See Also':
+                self['See Also'] = self._parse_see_also(content)
+            else:
+                self[section] = content
+
+    # string conversion routines
+
+    def _str_header(self, name, symbol='-'):
+        return [name, len(name)*symbol]
+
+    def _str_indent(self, doc, indent=4):
+        out = []
+        for line in doc:
+            out += [' '*indent + line]
+        return out
+
+    def _str_signature(self):
+        if self['Signature']:
+            return [self['Signature'].replace('*','\*')] + ['']
+        else:
+            return ['']
+
+    def _str_summary(self):
+        if self['Summary']:
+            return self['Summary'] + ['']
+        else:
+            return []
+
+    def _str_extended_summary(self):
+        if self['Extended Summary']:
+            return self['Extended Summary'] + ['']
+        else:
+            return []
+
+    def _str_param_list(self, name):
+        out = []
+        if self[name]:
+            out += self._str_header(name)
+            for param,param_type,desc in self[name]:
+                out += ['%s : %s' % (param, param_type)]
+                out += self._str_indent(desc)
+            out += ['']
+        return out
+
+    def _str_section(self, name):
+        out = []
+        if self[name]:
+            out += self._str_header(name)
+            out += self[name]
+            out += ['']
+        return out
+
+    def _str_see_also(self, func_role):
+        if not self['See Also']: return []
+        out = []
+        out += self._str_header("See Also")
+        last_had_desc = True
+        for func, desc, role in self['See Also']:
+            if role:
+                link = ':%s:`%s`' % (role, func)
+            elif func_role:
+                link = ':%s:`%s`' % (func_role, func)
+            else:
+                link = "`%s`_" % func
+            if desc or last_had_desc:
+                out += ['']
+                out += [link]
+            else:
+                out[-1] += ", %s" % link
+            if desc:
+                out += self._str_indent([' '.join(desc)])
+                last_had_desc = True
+            else:
+                last_had_desc = False
+        out += ['']
+        return out
+
+    def _str_index(self):
+        idx = self['index']
+        out = []
+        out += ['.. index:: %s' % idx.get('default','')]
+        for section, references in idx.iteritems():
+            if section == 'default':
+                continue
+            out += ['   :%s: %s' % (section, ', '.join(references))]
+        return out
+
+    def __str__(self, func_role=''):
+        out = []
+        out += self._str_signature()
+        out += self._str_summary()
+        out += self._str_extended_summary()
+        for param_list in ('Parameters','Returns','Raises'):
+            out += self._str_param_list(param_list)
+        out += self._str_section('Warnings')
+        out += self._str_see_also(func_role)
+        for s in ('Notes','References','Examples'):
+            out += self._str_section(s)
+        out += self._str_index()
+        return '\n'.join(out)
+
+
+def indent(str,indent=4):
+    indent_str = ' '*indent
+    if str is None:
+        return indent_str
+    lines = str.split('\n')
+    return '\n'.join(indent_str + l for l in lines)
+
+def dedent_lines(lines):
+    """Deindent a list of lines maximally"""
+    return textwrap.dedent("\n".join(lines)).split("\n")
+
+def header(text, style='-'):
+    return text + '\n' + style*len(text) + '\n'
+
+
+class FunctionDoc(NumpyDocString):
+    def __init__(self, func, role='func', doc=None):
+        self._f = func
+        self._role = role # e.g. "func" or "meth"
+        if doc is None:
+            doc = inspect.getdoc(func) or ''
+        try:
+            NumpyDocString.__init__(self, doc)
+        except ValueError, e:
+            print '*'*78
+            print "ERROR: '%s' while parsing `%s`" % (e, self._f)
+            print '*'*78
+            #print "Docstring follows:"
+            #print doclines
+            #print '='*78
+
+        if not self['Signature']:
+            func, func_name = self.get_func()
+            try:
+                # try to read signature
+                argspec = inspect.getargspec(func)
+                argspec = inspect.formatargspec(*argspec)
+                argspec = argspec.replace('*','\*')
+                signature = '%s%s' % (func_name, argspec)
+            except TypeError, e:
+                signature = '%s()' % func_name
+            self['Signature'] = signature
+
+    def get_func(self):
+        func_name = getattr(self._f, '__name__', self.__class__.__name__)
+        if inspect.isclass(self._f):
+            func = getattr(self._f, '__call__', self._f.__init__)
+        else:
+            func = self._f
+        return func, func_name
+            
+    def __str__(self):
+        out = ''
+
+        func, func_name = self.get_func()
+        signature = self['Signature'].replace('*', '\*')
+
+        roles = {'func': 'function',
+                 'meth': 'method'}
+
+        if self._role:
+            if not roles.has_key(self._role):
+                print "Warning: invalid role %s" % self._role
+            out += '.. %s:: %s\n    \n\n' % (roles.get(self._role,''),
+                                             func_name)
+
+        out += super(FunctionDoc, self).__str__(func_role=self._role)
+        return out
+
+
+class ClassDoc(NumpyDocString):
+    def __init__(self,cls,modulename='',func_doc=FunctionDoc,doc=None):
+        if not inspect.isclass(cls):
+            raise ValueError("Initialise using a class. Got %r" % cls)
+        self._cls = cls
+
+        if modulename and not modulename.endswith('.'):
+            modulename += '.'
+        self._mod = modulename
+        self._name = cls.__name__
+        self._func_doc = func_doc
+
+        if doc is None:
+            doc = pydoc.getdoc(cls)
+
+        NumpyDocString.__init__(self, doc)
+
+    @property
+    def methods(self):
+        return [name for name,func in inspect.getmembers(self._cls)
+                if not name.startswith('_') and callable(func)]
+
+    def __str__(self):
+        out = ''
+        out += super(ClassDoc, self).__str__()
+        out += "\n\n"
+
+        #for m in self.methods:
+        #    print "Parsing `%s`" % m
+        #    out += str(self._func_doc(getattr(self._cls,m), 'meth')) + '\n\n'
+        #    out += '.. index::\n   single: %s; %s\n\n' % (self._name, m)
+
+        return out
+
+
-- 
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